References
J. C. Kendrew, G. Bodo, H.M. Dintzis, R.G. Parrish, H. Wyckoff, D.C. Phillips, Nature 1958, 181, 662-666, https://doi.org/10.1038/181662a0.
C.B. Anfinsen, Science 1973, 181, 223-230, https://doi.org/10.1126/science.181.4096.223.
L. Regan, W. F. DeGrado, Science 1988, 241, 976-978, https://doi.org/10.1126/science.3043666.
B.I. Dahiyat, S.L. Mayo, Science 1997, 278, 82-87, https://doi.org/10.1126/science.278.5335.82.
B. Kuhlman, G. Dantas, G. C. Ireton, G. Varani, B.L. Stoddard, D. Baker, Science 2003, 302, 1364-1368, https://doi.org/10.1126/science.1089427.
K.T. Simons, R. Bonneau, I. Ruczinski, D. Baker, Proteins: Structure, Function, and Bioinformatics 1999, 37, 171-176, https://doi.org/10.1002/(SICI)1097-0134(1999)37:3+<171::AID-PROT21>3.3.CO;2-Q.
L. Jiang, E.A. Althoff, F. R. Clemente, L. Doyle, D. Röthlisberger, A. Zanghellini, J.L. Gallaher, J. L. Betker, F. Tanaka, C.F. Barbas III, D. Hilvert, K. N. Houk, B.L. Stoddard, D. Baker, Science 2008, 319, 1387-1391, https://doi.org/10.1126/science.1152692.
C.E. Tinberg, S.D. Khare, J. Dou, L. Doyle, J.W. Nelson, A. Schena, W. Jankowski, C.G. Kalodimos, K. Johnsson, B.L. Stoddard, D. Baker, Nature 2013, 501, 212-216, https://doi.org/10.1038/nature12443.
J.B. Bale, S. Gonen, Y. Liu, W. Sheffler, D. Ellis, C. Thomas, D. Cascio, T.O. Yeates, T. Gonen, N.P. King, D. Baker, Science 2016, 353, 389-394, https://doi.org/10.1126/science.aaf8818.
M.J. Bick, P.J. Greisen, K.J. Morey, M.S. Antunes, D. La, B. Sankaran, L. Reymond, K. Johnsson, J.I. Medford, D. Baker, eLife 2017, 6, e28909, https://doi.org/10.7554/eLife.28909.
R.A. Langan, S.E. Boyken, A.H. Ng, J.A. Samson, G. Dods, A.M. Westbrook, T.H. Nguyen, M.J. Lajoie, Z. Chen, S. Berger, V.K. Mulligan, J.E. Dueber, W.R.P. Novak, H. El-Samad, D. Baker, Nature 2019, 572, 205-210, https://doi.org/10.1038/s41586-019-1432-8.
A W. Senior, R. Evans, J. Jumper, J. Kirkpatrick, L. Sifre, T. Green, C. Qin, A. Žídek, A.W.R. Nelson, A. Bridgland, H. Penedones, S. Petersen, K. Simonyan, S. Crossan, P. Kohli, D.T. Jones, D. Silver, K. Kavukcuoglu, D. Hassabis, Nature 2020, 577, 706-710, https://doi.org/10.1038/s41586-019-1923-7.
J. Jumper, R. Evans, A. Pritzel, T. Green, M. Figurnov, O. Ronneberger, K. Tunyasuvunakool, R. Bates, A. Žídek, A. Potapenko, A. Bridgland, C. Meyer, S.A.A. Kohl, A. J. Ballard, A. Cowie, B. Romera-Paredes, S. Nikolov, R. Jain, J. Adler, T. Back, S. Petersen, D. Reiman, E. Clancy, M. Zielinski, M. Steinegger, M. Pacholska, T. Berghammer, S. Bodenstein, D. Silver, O. Vinyals, A.W. Senior, K. Kavukcuoglu, P. Kohli, D. Hassabis, Nature 2021, 596, 583-589, https://doi.org/10.1038/s41586-021-03819-2.
M. Baek, F. DiMaio, I. Anishchenko, J. Dauparas, S. Ovchinnikov, G.R. Lee, J. Wang, Q. Cong, L.N. Kinch, R.D. Schaeffer, C. Millán, H. Park, C. Adams, C.R. Glassman, A. DeGiovanni, J.H. Pereira, A.V. Rodrigues, A.A. van Dijk, A.C. Ebrecht, D.J. Opperman, T. Sagmeister, C. Buhlheller, T. Pavkov-Keller, M.K. Rathinaswamy, U. Dalwadi, C.K. Yip, J.E. Burke, K.C. Garcia, N.V. Grishin, P.D. Adams, R.J. Read, D. Baker, Science 2021, 373, 871-876, https://doi.org/10.1126/science.abj8754.
S.L. Lisanza, J.M. Gershon, S.W.K. Tipps, J.N. Sims, L. Arnoldt, S.J. Hendel, M.K. Simma, G. Liu, M. Yase, H. Wu, C.D. Tharp, X. Li, A. Kang, E. Brackenbrough, A.K. Bera, S. Gerben, B.J. Wittmann, A.C. McShan, D. Baker, Nature Biotechnology 2024, https://doi.org/10.1038/s41587-024-02395-w.
J. Dauparas, I. Anishchenko, N. Bennett, H. Bai, R.J. Ragotte, L.F. Milles, B.I.M. Wicky, A. Courbet, R.J. de Haas, N. Bethel, P.J.Y. Leung, T.F. Huddy, S. Pellock, D. Tischer, F. Chan, B. Koepnick, H. Nguyen, A. Kang, B. Sankaran, A.K. Bera, N.P. King, D. Baker, Science 2022, 378, 49-56, https://doi.org/10.1126/science.add2187.
I. Anishchenko, S.J. Pellock, T.M. Chidyausiku, T.A. Ramelot, S. Ovchinnikov, J. Hao, K. Bafna, C. Norn, A. Kang, A.K. Bera, F. DiMaio, L. Carter, C.M. Chow, G.T. Montelione, D. Baker, Nature 2021, 600, 547-552, https://doi.org/10.1038/s41586-021-04184-w.
B. Huang, M. Abedi, G. Ahn, B. Coventry, I. Sappington, C. Tang, R. Wang, T. Schlichthaerle, J.Z. Zhang, Y. Wang, I. Goreshnik, C.W. Chiu, A. Chazin-Gray, S. Chan, S. Gerben, A. Murray, S. Wang, J. O'Neill, L. Yi, R. Yeh, A. Misquith, A. Wolf, L.M. Tomasovic, D.I. Piraner, M.J. Duran Gonzalez, N.R.; Bennett, P. Venkatesh, M. Ahlrichs, C. Dobbins, W. Yang, X. Wang, D.D. Sahtoe, D. Vafeados, R. Mout, S. Shivaei, L. Cao, L. Carter, L. Stewart, J.B. Spangler, K.T. Roybal, P. Greisen Jr., X. Li, G.J.L.; Bernardes, C.R. Bertozzi, D. Baker, Nature 2024, https://doi.org/10.1038/s41586-024-07948-2.
S. Berger, F. Seeger, T.-Y. Yu, M. Aydin, H. Yang, D. Rosenblum, L. Guenin-Macé, C. Glassman, L. Arguinchona, C. Sniezek, A. Blackstone, L. Carter, R. Ravichandran, M. Ahlrichs, M. Murphy, I.S. Pultz, A. Kang, A.K. Bera, L. Stewart, K.C. Garcia, S. Naik, J.B. Spangler, F. Beigel, M. Siebeck, R. Gropp, D. Baker, Cell 2024, 187, 4305-4317.e4318, https://doi.org/10.1016/j.cell.2024.05.052.
N.I. Edman, A. Phal, R.L. Redler, T. Schlichthaerle, S.R. Srivatsan, D.D. Ehnes, A. Etemadi, S.J. An, A. Favor, Z. Li, F. Praetorius, M. Gordon, T. Vincent, S. Marchiano, L. Blakely, C. Lin, W. Yang, B. Coventry, D.R. Hicks, L. Cao, N. Bethel, P. Heine, A. Murray, S. Gerben, L. Carter, M. Miranda, B. Negahdari, S. Lee, C. Trapnell, Y. Zheng, C.E. Murry, D.K. Schweppe, B.S. Freedman, L. Stewart, D.C. Ekiert, J. Schlessinger.J. Shendure, G. Bhabha, H. Ruohola-Baker, D. Baker, Cell 2024, 187, 3726-3740.e3743, https://doi.org/10.1016/j.cell.2024.05.025.